PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.388780.1
Common NameCsa_7G378550, LOC101218718
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 317aa    MW: 32898.1 Da    PI: 6.4033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.388780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.4e-10165209554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Cucsa.388780.1 165 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 209
                     99***********************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-15158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-15162219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-7165209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MANNHSDTQA DDFLEQILGI PFGSSDQGLA GTDGGLAGAA AAAAAAAAAV AAQGQAPMML  60
QLSSGDGGGH ITTIGSGSVG GTGFHGGPPF PLGLSLDQGK SGFLKAEEAS GSGKRYCGEV  120
VDVRASSVKN VFQGQQMHAA MGAAPHPPAM RPRVRARRGQ ATDPHSIAER LRRERIAERI  180
RALQELVPSV NKTDRAAMLD EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL VTDIPLSSVE  240
EEGSEGGRNQ PAWDKWSNDG TERQVAKLME ENVGAAMQFL QSKALCIMPI SLASAIYHTQ  300
PPDSSSVVKP ESNPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818031e-168LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132551e-168LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146956.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-128UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0A0KAD20.0A0A0A0KAD2_CUCSA; Uncharacterized protein
STRINGGLYMA19G34360.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-82bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]